Whole-genome Single Nucleotide Polymorphism (SNP) analysis using BIONUMERICS. See the wgSNP application page for a complete overview.
wgSNP analysis
4. wgSNP clustering
3. Perform wgSNP analysis and filter out relevant SNPs
2. Mapping the sequence reads against the reference sequence
1. Choose a reference sequence
An overview of the wgSNP workflow in BIONUMERICS
Installation of the WGS tools plugin and import of sequence reads (as data links)
Whole genome SNP: analysis and clustering
In this tutorial we will focus on the last two steps of the wgSNP workflow in BIONUMERICS: 1) wgSNP analysis + filter out relevant SNP, 2) wgSNP clustering.
Whole genome SNP with mapping performed on the cloud calculation engine
In this tutorial we will focus on the first two steps of the wgSNP workflow in BIONUMERICS: reference sequence selection and mapping of the reads against the reference sequence. The mapping of the reads against the reference sequence is done on the cloud calculation engine.
Whole genome SNP with mapping performed locally on your own computer
In this tutorial we will focus on the first two steps of the wgSNP workflow in BIONUMERICS: reference sequence selection and mapping of the reads against the reference sequence. The mapping of the reads against the reference sequence is done locally.